Interact with the NGS

I recently updated the NGS presence on Facebook to a new interactive page.  Instead of the old-style group page, the NGS now has a new page under the UK NGI banner which reflects our role as the lead in the UK National Grid Initiative along with GridPP.

By “liking” our page you can receive news updates from the NGS all in one place as well as news updates from the Software Sustainability Institute (SSI) and GridPP.  Please feel free to invite your friends and colleagues to "like" our page and to share articles with your friends list - help spread the word about e-infrastructure! 

Hot off the press…

Released the beginning of June, the new edition of the NGS quarterly newsletter is out now. The June edition features a range of articles including –

• Supporting e-Infrastructure Uptake through Community Champions for Research (SeIUCCR) - a new joint project between the NGS and the SSI
• around up of the successful and engaging Collaborations Workshop held by the SSI earlier this year
• an in-depth look at the new NGS load monitor
• Sysadmins corner tips on using Screen
• an introduction to our new member site - the University of Huddersfield

We are always looking for news items for our newsletter and fortnightly email bulletin so if you have anything you would like to contribute please get in touch! We are particularly keen to hear from our users and their application of e-research. Have you recently presented or published a paper featuring research performed on the NGS? If so then we’d love to hear from you!

Arts and Humanities and ICT

Following on from my previous blog post about the JISC- Future of Research? conference, the next parallel session I attended was “Evolution and Revolution in ICT and Arts and Humanities research”.

The first presenter was Simon Tanner from King’s College London who spoke about some JISC digitised collections. No slides from this one I’m afraid as he showed us pretty pictures instead!

The next speaker was from Mimas who spoke about “long tails and efficiencies of scale”. The slides for this one are available and of particular relevance to myself and the NGS, was the observation that services have to show –

• User demand
• Benefits
• Impact and value
• Sustainability

This is something that the NGS has been undertaking recently and will continue to do so as we come up for refunding next year. You may have seen a small flurry of stats etc on the website and we have been undertaking more stats gathering behind the scenes from the proliferation of data available from usage stats and user applications. From this we are building up a picture of user demand, impact and value etc.

We hope that our users will help us by contributing to our forthcoming annual user survey and our follow up roadshow survey. If you have attended any NGS roadshows we would be grateful if you could complete the short survey which will take about a minute to complete! This will help us shape future roadshow events and also analyse the benefits that users get from attending these events.

The final speaker was John Coleman from the University of Oxford who presented on “Large Scale Computational Research in Arts and Humanities”. He started with an interesting fact that in 2008 YouTube was the second most popular search engine with people looking for speech / audio instead of text. He is currently working on a JISC funded project to “mine a year of speech” which aims to annotate a years worth of data in the form of a corpus. To do this he is currently using about 20 computers set up as a cluster in a local lab. However he is now looking at placing the data in several other universities which he says is “like grid computing”. John also highlighted a report available on "ICT Tools for searching, annotation and analysis of audiovisual material" which may be of interest to people.

The JISC Future of Research? conference had some very interesting parallel sessions and I hope it continues next year!

All the news on the forthcoming NGS IF'10

In an extraordinary show of organisation, I have just put up the agenda for this years NGS Innovation Forum even though it’s not until November – a whole 5 months away!

The reason for this organisation is mainly due to a wonderful programme committee for the event consisting of users, IT sys admins, Campus Champions and NGS staff members. We have put together what will hopefully be an interactive, engaging and thought provoking event where everyone will come away with some new found knowledge.

On the first day which is primarily aimed at users we will be showcasing some of the tools from the NGS such as the UI/WMS and Hermes. This will not be “death by PowerPoint” and instead NGS staff will demo the tools and walk you through using them from a users point of view. We will also be having a session where we can gather feedback from delegates about the NGS and respond to your comments.

If you’d like to come away from the event with more than new found knowledge be sure to submit a poster abstract for our poster session on the Tuesday evening. We are inviting all users to present a poster showcasing their research using the NGS and there will be prize for the best poster as voted for by the delegates.

The second day will be aimed more at IT staff, sys admins, research computing staff etc. There will be presentations from the “coal face” with a presentation from a NGS member site detailing their experience of working with us. We will also be focusing on the bigger picture by showing how the NGS can facilitate collaboration between research groups both nationally and internationally. This will be followed by presentations by large European multi-institution projects. We know that allowing external people to use your resources is a big responsibility so we have dedicated a session to “keeping track” which will also allow for discussion regarding accounting in institutions.

All in all we hope you will find the event both stimulating and informative. Keep an eye on here for registration opening and hopefully we’ll see you in November!

And the wind down begins

Things are beginning to quieten down here at the NGS in preparation for the Christmas holidays. As you may expect NGS staff are also on holiday over the next few weeks so we have announced our Christmas cover arrangements in the fortnightly NGS email bulletin that went out today. This announcement is also on the front page of our website.

However, although things may be calming down now, next year is already looking very busy. Personally I'm going to be going through all the feedback we've received on our new website and addressing the comments, suggestions and feedback. We want to make the website as useful for our users and institutions as we possibly can so all feedback is welcome!

If you haven't already done so there is still time to complete our user survey which will close on the 20th of January 2010. So if you would like to be in with a chance to win one of three Amazon vouchers to help with your January sales shopping then make sure you complete the survey soon! I'll be spending the end of January going through the user survey results so if you would like your comments and feedback heard then you know what to do!

I'm also busy organising 4 NGS roadshows for the beginning of next year at various sites across the country. Keep an eye out on here and the NGS website for more news on these. The roadshows are becoming more and more popular and sometimes it's hard keeping up with demand. However we will consider all requests to hold more roadshows after Easter! If you would like a NGS roadshow at your institution then please let us know by emailing the support desk.

I hope you all have a great holiday and that we'll see you back on the NGS in 2010.

NGS on the Road!

Earlier this week the NGS roadshow team travelled to Aston University to host a roadshow event for staff and students. The event was well attended with 25 people in attendance ranging from PhD students to ITS staff.

The talks covered topic such as what is the NGS?, getting started with the NGS and the NGS portal and job submission. There was also a presentation from one of our users – Jonathan Mitchell from the University of Leeds bravely stepped in after our original presenter couldn’t make it at the last minute. Jonathan talked about using NGS resources to understand the folding of DNA and showed some rather impressive animations.

The presentations created a great deal of discussion which carried over into lunch. There was plenty of NGS associated staff on hand to answer questions including David Wallom (NGS technical director), David Fergusson (NeSC Deputy Director of Training, Outreach and Education) and Hamza Mehammed (NeSC Senior Trainer). I was also there in my role as NGS Liaison Officer.

The feedback collected from the day was very positive with the majority of people planning on using NGS resources in the future as well as the majority of people planning on telling their colleagues etc about the NGS.

The NGS roadshow events are free to host as the NGS covers the cost of catering and staff travel. All the local institution has to do is book a room and help to advertise the event locally. The roadshows can be held just for the host institute or people from surrounding institutes can be invited as well. If you’d like to know more about the roadshows then please see the website or contact Gillian Sinclair, the NGS Liaison Officer (Gillian.sinclair(at)manchester.ac.uk).

After the storm

I'd like to say thank you to everyone who came along to the National Grid Service Innovation Forum '08 last week. We played host to over 120 people over 2 days at the Museum of Science and Industry (MoSI) in Manchester where delegates heard over 20 presentations ranging from services currently available to NGS users to upcoming services and the future direction of the NGS.

Thank you to everyone who has so far completed a feedback form and I'm pleased to say that the feedback so far has been extremely positive. If you still have a feedback form that you would like to submit then please contact me. The feedback has strongly indicated that we should hold a similar event at least once a year so watch this space!

It's also nice to see that reports about the event are popping up in other blogs such as this one from the ESRC National Centre for e-Social Science (NCeSS).

The slides from the presentations will be up on the NGS website very soon and nearly all the presentations were videoed by colleagues from the Lancaster University Centre for e-Science so if you couldn't attend in person, you can see what you missed!

In other news there have been further software updates at the NGS so if you are a user of any of the following please take note!

EMBOSS 6.0.1
The latest release of EMBOSS (6.0.1) will be available on the NGS node at RAL (ngs.rl.ac.uk) next week. EMBOSS (The European Molecular Biology Open Software Suite) is an analysis package specially developed for the needs of the molecular biology user community. The software automatically copes with data in a variety of formats and even allows transparent retrieval of sequence data from the web. EMBOSS also integrates a range of currently available packages and tools, for sequence analysis, into a seamless whole. Further information on running EMBOSS on NGS resources can be found here.

Scali-MPI 5.6.4
The latest version of the commercial PlatformMPI (previously known as ‘ScaliMPI Connect’) MPI libraries are available on the NGS node at RAL (ngs.rl.ac.uk). All MPI software at RAL is linked to this latest version and is the default when compiling using mpicc,mpif77,mpif90,mpic++ . It provides a number of bug fixes and, for some user codes which call ‘free()’ repeatedly, it provides a significant speedup. RAL have benchmarked these libraries up to 10% faster than equivalent open source libraries such as MPICH.